# Modules

Documentation for the modules used by this pipeline.

```{toctree}
:maxdepth: 1

check-and-download-rmlibrary
collect-software-versions
fetch-genome
fetch-repeat-model
generate-repeatmodeler-library
run-dust
run-red
run-repeatmasker
run-trf
upload-into-ftp
upload-repeats-into-ftp
```