# RUN_DUST

This process runs DustMasker to identify low-complexity regions in a genome file.
It uses the dustmasker tool to perform the analysis and generates a GTF file
containing the identified low-complexity regions. The output GTF file is saved
in the "dust" directory under the output directory for the given GCA accession.
The process also generates a versions.yml file containing the version of Dust used.

## Process Details

| Property | Value |
|----------|-------|
| Process | `RUN_DUST` |
| Label | `python` |
| Tag | `${meta.gca}:genome` |
| Publish directory | `"${params.outdir}/${meta.gca}/dust/", pattern: "**/*.gtf", mode: "copy"` |

## Inputs

### Nextflow interface

```nextflow
val(meta)
```

## Outputs

### Nextflow interface

```nextflow
tuple val(meta), path("*.gtf"), emit: dust_out
path "versions.yml", emit: versions_file
```

## Implementation Summary

- Execute Run Dust
- Rename output files
- Generate software version report

## Source

`/home/runner/work/ensembl-genes-nf/ensembl-genes-nf/pipelines/repeat/modules/run_dust.nf`