UPLOAD_REPEATS_INTO_FTP

This process uploads the RepeatModeler library files (FASTA, STK, and log files) to the Ensembl FTP server for a given species. It creates a directory for the species on the FTP server and copies the files into that directory. The process also generates a versions.yml file containing the version of the upload process used.

Process Details

Property	Value
Process	`UPLOAD_REPEATS_INTO_FTP`
Label	`'ensembl_ftp'`
Tag	`$meta.gca:upload_repeats_into_ftp`

Inputs

Nextflow interface

tuple val(meta),path(fasta_file),path(stk_file),path(log_file)

Outputs

Nextflow interface

tuple val(meta),path(fasta_file), emit: library_out
path "versions.yml", emit: versions_file

Implementation Summary

Generate software version report

Source

/home/runner/work/ensembl-genes-nf/ensembl-genes-nf/pipelines/repeat/modules/upload_repeats_into_ftp.nf