Installation¶

GenomIO is now publicly available in PyPI, so you can easily install it with your preferred Python package manager, e.g.

pip install ensembl-genomio

API setup and installation¶

To run also the pipelines present in the repository, you will need to have Perl 5.26 and Bioperl 1.6.9+ installed in your system, and then clone the GitHub repository together with some other repositories:

git clone https://github.com/Ensembl/ensembl-genomio
git clone https://github.com/Ensembl/ensembl-analysis -b dev/hive_master
git clone https://github.com/Ensembl/ensembl-production
git clone https://github.com/Ensembl/ensembl-hive
git clone https://github.com/Ensembl/ensembl-taxonomy
git clone https://github.com/Ensembl/ensembl-orm

Documentation¶

Documentation for Ensembl-genomio generated using mkdocs. For full information visit mkdocs.org.

Useful commands: * mkdocs new [dir-name] - Create a new project * mkdocs serve - Start the live-reloading docs server * mkdocs build - Build the documentation site * mkdocs -h - Print help message and exit