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Ensembl-GenomIO

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Ensembl/ensembl-genomio

Ensembl-GenomIO

Ensembl/ensembl-genomio

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- ensembl
  ensembl
  - brc4
    brc4
    
    runnable
    runnable
    
    compare_fasta
    
    compare_report
    
    fill_metadata
    
    json_schema_factory
    
    load_sequence_data
    
    prepare_genome
    
    seqregion_parser
  - io
    io
    
    genomio
    genomio
    
    annotation
    annotation
    
    update_description
    
    assembly
    assembly
    
    download
    
    status
    
    data
    data
    
    external_db_map
    
    gff3
    
    schemas
    
    database
    database
    
    core_server
    
    dbconnection_lite
    
    factory
    
    meta_getter
    
    events
    events
    
    dump
    
    format
    
    load
    
    external_db
    external_db
    
    db_map
    
    fasta
    fasta
    
    chunk
    
    process
    
    genbank
    genbank
    
    download
    
    extract_data
    
    genome_metadata
    genome_metadata
    
    dump
    
    extend
    
    prepare
    
    genome_stats
    genome_stats
    
    compare
    
    dump
    
    gff3
    gff3
    
    exceptions
    
    extract_annotation
    
    features
    
    gene_merger
    
    id_allocator
    
    overlaps
    
    process
    
    restructure
    
    simplifier
    
    manifest
    manifest
    
    check_integrity
    
    compute_stats
    
    generate
    
    manifest
    
    manifest_stats
    
    schemas
    schemas
    
    json
    json
    
    factory
    
    validate
    
    seq_region
    seq_region
    
    collection
    
    dump
    
    exceptions
    
    gbff
    
    mappings
    
    prepare
    
    report
    
    utils
    utils
    
    json_utils
Running Nextflow
Ensembl-Genomio Pipelines

schemas

`ensembl.io.genomio.schemas` ¶

Handling and verification of different format schemas module.