Pipeline

The Ensembl Anno workflow consists of five analysis groups followed by gene set finalisation.

Pipeline overview

Genome

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Repeat annotation

│ ├── Red ├── Dust ├── TRF └── RepeatMasker │ ▼

Simple features

│ ├── CpG └── Eponine │ ▼

Transcriptomic evidence

│ ├── STAR ├── StringTie ├── Scallop └── minimap2 │ ▼

Protein evidence

│ ├── GenBlast └── Miniprot │ ▼

Gene set finalisation

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Optional loading into Ensembl Core DB