Coverage report: 95%

Files Functions Classes

coverage.py v7.15.0, created at 2026-07-09 09:43 +0000

      Statements   Branches   Total
File function   coverage statements missing excluded   coverage branches partial   coverage
src/ensembl/utils/__init__.py (no function)   100% 5 0 0   100% 0 0   100%
src/ensembl/utils/archive.py _unpack_gz_files   100% 4 0 0   100% 0 0   100%
src/ensembl/utils/archive.py open_gz_file   100% 6 0 0   100% 2 0   100%
src/ensembl/utils/archive.py extract_file   88% 8 1 0   75% 4 1   83%
src/ensembl/utils/archive.py extract_file_cli   100% 0 0 9   100% 0 0   100%
src/ensembl/utils/archive.py (no function)   100% 17 0 1   100% 0 0   100%
src/ensembl/utils/argparse.py ArgumentParser.__init__   100% 2 0 0   100% 0 0   100%
src/ensembl/utils/argparse.py ArgumentParser._validate_src_path   100% 6 0 0   100% 4 0   100%
src/ensembl/utils/argparse.py ArgumentParser._validate_dst_path   100% 14 0 0   100% 12 0   100%
src/ensembl/utils/argparse.py ArgumentParser._validate_number   100% 9 0 0   100% 4 0   100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument   100% 3 0 0   100% 2 0   100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument_src_path   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument_dst_path   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument_url   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/argparse.py ArgumentParser.add_numeric_argument   100% 4 0 0   100% 2 0   100%
src/ensembl/utils/argparse.py ArgumentParser.add_server_arguments   100% 7 0 0   100% 2 0   100%
src/ensembl/utils/argparse.py ArgumentParser.add_log_arguments   100% 11 0 0   100% 2 0   100%
src/ensembl/utils/argparse.py ArgumentParser.parse_args   100% 12 0 0   100% 4 0   100%
src/ensembl/utils/argparse.py (no function)   100% 23 0 0   100% 0 0   100%
src/ensembl/utils/checksums.py get_file_hash   100% 5 0 0   100% 0 0   100%
src/ensembl/utils/checksums.py validate_file_hash   100% 2 0 0   100% 0 0   100%
src/ensembl/utils/checksums.py (no function)   100% 5 0 0   100% 0 0   100%
src/ensembl/utils/database/__init__.py (no function)   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.__init__   100% 4 0 0   100% 2 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.__repr__   100% 0 0 2   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.load_metadata   100% 2 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.create_all_tables   100% 2 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.create_table   100% 2 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.url   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.db_name   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.host   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.port   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.dialect   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.tables   100% 3 0 0   100% 2 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.get_primary_key_columns   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.get_columns   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.connect   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.begin   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.dispose   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection._enable_sqlite_savepoints   100% 4 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection._enable_sqlite_savepoints.do_connect   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection._enable_sqlite_savepoints.do_begin   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/dbconnection.py DBConnection.session_scope   100% 12 0 0   50% 2 1   93%
src/ensembl/utils/database/dbconnection.py DBConnection.test_session_scope   65% 20 7 0   25% 4 1   58%
src/ensembl/utils/database/dbconnection.py (no function)   100% 37 0 1   100% 0 0   100%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__init__   90% 21 2 0   75% 8 2   86%
src/ensembl/utils/database/unittestdb.py UnitTestDB._load_schema_and_data   82% 17 3 0   88% 16 2   85%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__repr__   100% 0 0 2   100% 0 0   100%
src/ensembl/utils/database/unittestdb.py UnitTestDB.drop   100% 2 0 0   100% 0 0   100%
src/ensembl/utils/database/unittestdb.py UnitTestDB._load_data   29% 7 5 0   17% 6 1   23%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__enter__   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__exit__   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/database/unittestdb.py (no function)   100% 21 0 1   100% 0 0   100%
src/ensembl/utils/docs/__init__.py setup   100% 4 0 0   100% 0 0   100%
src/ensembl/utils/docs/__init__.py setup._append_static   100% 8 0 0   100% 6 0   100%
src/ensembl/utils/docs/__init__.py (no function)   100% 4 0 2   100% 0 0   100%
src/ensembl/utils/docs/config.py build_config   100% 20 0 0   100% 14 0   100%
src/ensembl/utils/docs/config.py configure   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/docs/config.py (no function)   100% 10 0 0   100% 0 0   100%
src/ensembl/utils/docs/entrypoints_ext.py _read_entry_points   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/docs/entrypoints_ext.py _build_markdown_table   100% 10 0 0   100% 2 0   100%
src/ensembl/utils/docs/entrypoints_ext.py _inject_table   100% 8 0 0   100% 2 0   100%
src/ensembl/utils/docs/entrypoints_ext.py _on_builder_inited   100% 17 0 0   100% 2 0   100%
src/ensembl/utils/docs/entrypoints_ext.py setup   100% 4 0 0   100% 0 0   100%
src/ensembl/utils/docs/entrypoints_ext.py (no function)   86% 22 3 0   50% 2 1   83%
src/ensembl/utils/docs/switcher.py main   100% 0 0 18   100% 0 0   100%
src/ensembl/utils/docs/switcher.py (no function)   100% 2 0 1   100% 0 0   100%
src/ensembl/utils/logging.py formatTime   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/logging.py init_logging   100% 10 0 0   100% 2 0   100%
src/ensembl/utils/logging.py init_logging_with_args   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/logging.py (no function)   100% 11 0 0   100% 0 0   100%
src/ensembl/utils/plugin.py pytest_addoption   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/plugin.py pytest_configure   100% 4 0 0   100% 2 0   100%
src/ensembl/utils/plugin.py pytest_report_header   100% 3 0 0   100% 0 0   100%
src/ensembl/utils/plugin.py local_data_dir   100% 1 0 0   100% 0 0   100%
src/ensembl/utils/plugin.py fixture_assert_files   100% 2 0 0   100% 0 0   100%
src/ensembl/utils/plugin.py fixture_assert_files._assert_files   100% 7 0 0   100% 0 0   100%
src/ensembl/utils/plugin.py fixture_db_factory   100% 7 0 0   75% 4 1   91%
src/ensembl/utils/plugin.py fixture_db_factory._db_factory   100% 9 0 0   100% 4 0   100%
src/ensembl/utils/plugin.py test_dbs   100% 12 0 0   100% 4 0   100%
src/ensembl/utils/plugin.py (no function)   100% 24 0 0   100% 0 0   100%
src/ensembl/utils/rloader.py RemoteFileLoader.__init__   100% 2 0 0   100% 2 0   100%
src/ensembl/utils/rloader.py RemoteFileLoader.__parse   100% 15 0 0   100% 8 0   100%
src/ensembl/utils/rloader.py RemoteFileLoader.r_open   100% 11 0 0   100% 2 0   100%
src/ensembl/utils/rloader.py (no function)   100% 18 0 0   100% 0 0   100%
Total     96% 579 21 37   88% 134 10   95%

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