Inheritance diagram for Bio::EnsEMBL::MetaData::BaseInfo:

Class Summary

Description

Base class for other data objects in Bio::EnsEMBL::MetaData API.

See-also

Bio::EnsEMBL::MetaData::GenomeInfo Bio::EnsEMBL::MetaData::GenomeComparaInfo Bio::EnsEMBL::MetaData::GenomeAssemblyInfo Bio::EnsEMBL::MetaData::GenomeOrganismInfo Bio::EnsEMBL::MetaData::DataReleaseInfo Bio::EnsEMBL::MetaData::DatabaseInfo Bio::EnsEMBL::MetaData::EventInfo Bio::EnsEMBL::MetaData::DBSQL::BaseInfoAdaptor

Definition at line 21 of file BaseInfo.pm.

Available Methods
protected void	_load_child ()
protected void	_preload ()
protected	_unload ()
public Bio::EnsEMBL::MetaData::DBSQL::GenomeInfoAdaptor	adaptor ()
public Int	count_hash_lengths ()
public	count_hash_values ()
public DbID	dbID ()
public	new ()
public	to_hash ()

Method Documentation

protected void Bio::EnsEMBL::MetaData::BaseInfo::_load_child ( )

  Description: Lazy load method for loading children from database if not initialised
  Arg        : Key to find child data in object hash
  Arg        : Method for loading child data from adaptor()
  Returntype : none
  Exceptions : none
  Caller     : Internal
  Status     : Stable

Code:

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protected void Bio::EnsEMBL::MetaData::BaseInfo::_preload ( )

  Description: Ensure all children are loaded (used for hash transformation)
  Returntype : none
  Exceptions : none
  Caller     : Internal
  Status     : Stable

Code:

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  Description: Remove all children (used after hash transformation to ensure object is minimised)
  Returntype : none
  Exceptions : none
  Caller     : dump_metadata.pl
  Status     : Stable

/**

Reimplemented in Bio::EnsEMBL::MetaData::GenomeAssemblyInfo, and Bio::EnsEMBL::MetaData::GenomeInfo.

protected Bio::EnsEMBL::MetaData::BaseInfo::_unload ( )

Undocumented method

Code:

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Reimplemented in Bio::EnsEMBL::MetaData::GenomeAssemblyInfo, and Bio::EnsEMBL::MetaData::GenomeInfo.

public Bio::EnsEMBL::MetaData::DBSQL::GenomeInfoAdaptor Bio::EnsEMBL::MetaData::BaseInfo::adaptor ( )

  Arg        : (optional) adaptor to set set
  Description: Gets/sets GenomeInfoAdaptor
  Returntype : Bio::EnsEMBL::MetaData::DBSQL::GenomeInfoAdaptor
  Exceptions : none
  Caller     : Internal
  Status     : Stable

Code:

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Reimplemented in Bio::EnsEMBL::MetaData::GenomeInfo.

public Int Bio::EnsEMBL::MetaData::BaseInfo::count_hash_lengths ( )

  Description: Sums sizes of arrays found in hash as values
  Arg		 : hashref
  Returntype : integer
  Exceptions : none
  Caller     : internal
  Status     : Stable

Code:

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Reimplemented in Bio::EnsEMBL::MetaData::GenomeInfo.

public Bio::EnsEMBL::MetaData::BaseInfo::count_hash_values ( )

Undocumented method

Code:

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Reimplemented in Bio::EnsEMBL::MetaData::GenomeInfo.

public DbID Bio::EnsEMBL::MetaData::BaseInfo::dbID ( )

  Arg        : (optional) dbID to set set
  Description: Gets/sets internal genome_id used as database primary key
  Returntype : dbID string
  Exceptions : none
  Caller     : Bio::EnsEMBL::MetaData::DBSQL::GenomeInfoAdaptor
  Status     : Stable

Code:

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Reimplemented in Bio::EnsEMBL::MetaData::GenomeInfo.

public Bio::EnsEMBL::MetaData::BaseInfo::new ( )

Undocumented method

Code:

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Reimplemented in Bio::EnsEMBL::MetaData::DatabaseInfo, Bio::EnsEMBL::MetaData::DataReleaseInfo, Bio::EnsEMBL::MetaData::EventInfo, Bio::EnsEMBL::MetaData::GenomeAssemblyInfo, Bio::EnsEMBL::MetaData::GenomeComparaInfo, Bio::EnsEMBL::MetaData::GenomeInfo, and Bio::EnsEMBL::MetaData::GenomeOrganismInfo.

public Bio::EnsEMBL::MetaData::BaseInfo::to_hash ( )

Undocumented method

Code:

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