Bio::EnsEMBL::MetaData::MetaDataDumper::UniProtReportDumper Class Reference

Inheritance diagram for Bio::EnsEMBL::MetaData::MetaDataDumper::UniProtReportDumper:

List of all members.

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Class Summary

Synopsis

Description

Implementation to dump metadata details to a TSV format file for use by UniProtKB.
See Bio::EnsEMBL::MetaData::MetaDataDumper for method details.

See-also

Bio::EnsEMBL::MetaData::MetaDataDumper

Definition at line 20 of file UniProtReportDumper.pm.

Available Methods
protected	_write_metadata_to_file ()
public void	dump_metadata ()
public void	end ()
public	logger ()
public Hashref	metadata_to_hash ()
public	new ()
public	start ()
public void	write_metadata ()
public String	yesno ()

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Method Documentation

protected Bio::EnsEMBL::MetaData::MetaDataDumper::UniProtReportDumper::_write_metadata_to_file

(

)

Undocumented method

Code:

Reimplemented from Bio::EnsEMBL::MetaData::MetaDataDumper.

public void Bio::EnsEMBL::MetaData::MetaDataDumper::dump_metadata

(

)

[inherited]

  Description: Write supplied metadata to file
  Arg        : Arrayref of Bio::EnsEMBL::MetaData::GenomeInfo
  Arg        : File to write to
  Arg        : Arrayref of divisions
  Arg        : Whether to dump to "all" file
  Returntype : none
  Exceptions : none
  Caller     : general
  Status     : Stable
 

Code:

public void Bio::EnsEMBL::MetaData::MetaDataDumper::end

(

)

[inherited]

  Description: Stop writing to output file(s) and close handles
  Returntype : none
  Exceptions : none
  Caller     : internal
  Status     : Stable
 

Code:

Reimplemented in Bio::EnsEMBL::MetaData::MetaDataDumper::JsonMetaDataDumper, and Bio::EnsEMBL::MetaData::MetaDataDumper::XMLMetaDataDumper.

public Bio::EnsEMBL::MetaData::MetaDataDumper::logger

(

)

[inherited]

Undocumented method

Code:

public Hashref Bio::EnsEMBL::MetaData::MetaDataDumper::metadata_to_hash

(

)

[inherited]

  Description: Turn metadata into hash
  Arg        : Arrayref of Bio::EnsEMBL::MetaData::GenomeInfo
  Returntype : Hashref
  Exceptions : none
  Caller     : internal
  Status     : Stable
 

Code:

public Bio::EnsEMBL::MetaData::MetaDataDumper::UniProtReportDumper::new

(

)

Undocumented method

Code:

Reimplemented from Bio::EnsEMBL::MetaData::MetaDataDumper.

public Bio::EnsEMBL::MetaData::MetaDataDumper::UniProtReportDumper::start

(

)

Undocumented method

Code:

Reimplemented from Bio::EnsEMBL::MetaData::MetaDataDumper.

public void Bio::EnsEMBL::MetaData::MetaDataDumper::write_metadata

(

)

[inherited]

  Arg        : Arrayref of Bio::EnsEMBL::MetaData::GenomeInfo
  Arg        : Division to write to
  Description: Write metadata to division files
  Returntype : none
  Exceptions : none
  Caller     : general
  Status     : Stable
 

Code:

public String Bio::EnsEMBL::MetaData::MetaDataDumper::yesno

(

)

[inherited]

  Description: Turn defined/integer into Y/N
  Arg        : Integer 1/0
  Returntype : String
  Exceptions : none
  Caller     : internal
  Status     : Stable
 

Code:

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The documentation for this class was generated from the following file:

• Bio/EnsEMBL/MetaData/MetaDataDumper/UniProtReportDumper.pm