sub pipeline_analyses {
my ($self) = @_;
return [ {
-logic_name => 'GenomeFactory',
-module => 'Bio::EnsEMBL::MetaData::Pipeline::GenomeFactory',
-max_retry_count => 1,
-input_ids => [ {} ],
-parameters => {
info_user => $self->o('info_user'),
info_host => $self->o('info_host'),
info_pass => $self->o('info_pass'),
info_port => $self->o('info_port'),
info_dbname => $self->o('info_dbname'),
release => $self->o('release'),
eg_release => $self->o('eg_release'),
release_date => $self->o('release_date'),
species => $self->o('species'),
antispecies => $self->o('antispecies'),
division => $self->o('division'),
run_all => $self->o('run_all'),
meta_filters => $self->o('meta_filters'),
chromosome_flow => 0,
variation_flow => 0 },
-flow_into =>
{ '2' => ['ProcessGenome'], '5' => ['ProcessCompara'] },
-hive_capacity => 1,
-meadow_type => 'LOCAL', }, {
-logic_name => 'ProcessGenome',
-module => 'Bio::EnsEMBL::MetaData::Pipeline::ProcessGenome',
-hive_capacity => 50,
-wait_for => ['GenomeFactory'],
-parameters => {
info_user => $self->o('info_user'),
info_host => $self->o('info_host'),
info_pass => $self->o('info_pass'),
info_port => $self->o('info_port'),
info_dbname => $self->o('info_dbname'),
release => $self->o('release'),
eg_release => $self->o('eg_release'),
release_date => $self->o('release_date'),
force_update => $self->o('force_update'),
contigs => $self->o('contigs'),
variation => $self->o('variation') } }, {
-logic_name => 'ProcessCompara',
-module => 'Bio::EnsEMBL::MetaData::Pipeline::ProcessCompara',
-hive_capacity => 50,
-wait_for => ['ProcessGenome'],
-rc_name => 'himem',
-parameters => {
info_user => $self->o('info_user'),
info_host => $self->o('info_host'),
info_pass => $self->o('info_pass'),
info_port => $self->o('info_port'),
info_dbname => $self->o('info_dbname'),
release => $self->o('release'),
eg_release => $self->o('eg_release'),
release_date => $self->o('release_date'),
force_update => $self->o('force_update') } },
{ -logic_name => 'UpdateBools',
-module => 'Bio::EnsEMBL::MetaData::Pipeline::UpdateBools',
-hive_capacity => 1,
-input_ids => [ {} ],
-wait_for => [ 'ProcessGenome', 'ProcessCompara' ],
-parameters => {
info_user => $self->o('info_user'),
info_host => $self->o('info_host'),
info_pass => $self->o('info_pass'),
info_port => $self->o('info_port'),
info_dbname => $self->o('info_dbname'),
release => $self->o('release'),
eg_release => $self->o('eg_release'),
force_update => $self->o('force_update') } }
];
} ## end sub pipeline_analyses
Code:
