Augustus

API

ensembl.tools.anno.transcriptomic_annotation.augustus.augustus_output_to_gtf(augustus_output_dir, augustus_genome_dir)

ensembl.tools.anno.transcriptomic_annotation.augustus.run_augustus_predict(augustus_path, main_output_dir, masked_genome_file, num_threads)

ensembl.tools.anno.transcriptomic_annotation.augustus.generate_hints(bam2hints_path, bam2wig_path, wig2hints_path, augustus_hints_dir, star_dir, num_threads)

ensembl.tools.anno.transcriptomic_annotation.augustus.multiprocess_augustus_hints(bam2hints_path, bam2wig_path, wig2hints_path, bam_file, augustus_hints_dir)

ensembl.tools.anno.transcriptomic_annotation.augustus.multiprocess_augustus_id(cmd, slice_id, genome_file, hints_file, output_dir)

ensembl.tools.anno.transcriptomic_annotation.augustus.create_slice_hints_file(region, start, end, hints_file, region_fasta_file_path)