Ensembl Genes Nextflow Pipelines

Pipelines

  • Pipelines
    • Example
    • Repeat Pipeline
      • Quick Links
      • Pipeline Overview
      • Pipeline Workflow
      • Main Components
        • Genome Retrieval
        • Repeat Library Preparation
        • Repeat Annotation
        • Result Publication
        • Reproducibility
      • Execution Modes
        • Complete Repeat Annotation
        • RepeatMasker Only
        • RED Only
        • DUST Only
        • TRF Only
      • Pipeline Parameters
      • Input
      • Outputs
      • Module Documentation
      • Workflow Documentation
      • Reproducibility
      • Related Documentation
    • Riboseq
    • Translon-Consensus
Ensembl Genes Nextflow Pipelines
  • Modules
  • View page source

Modules

Documentation for the modules used by this pipeline.

  • CHECK_AND_DOWNLOAD_RMLIBRARY
  • COLLECT_SOFTWARE_VERSIONS
  • FETCH_GENOME
  • FETCH_REPEAT_MODEL
  • GENERATE_REPEATMODELER_LIBRARY
  • RUN_DUST
  • RUN_RED
  • RUN_REPEATMASKER
  • RUN_TRF
  • UPLOAD_INTO_FTP
  • UPLOAD_REPEATS_INTO_FTP

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