Coverage report: 94%

Files Functions Classes

coverage.py v7.6.1, created at 2024-09-05 15:47 +0000

File function statements missing excluded branches partial coverage
src/ensembl/utils/__init__.py (no function) 5 0 0 0 0 100%
src/ensembl/utils/archive.py _unpack_gz_files 4 0 0 4 0 100%
src/ensembl/utils/archive.py open_gz_file 6 0 0 6 0 100%
src/ensembl/utils/archive.py extract_file 6 0 0 4 0 100%
src/ensembl/utils/archive.py extract_file_cli 0 0 8 0 0 100%
src/ensembl/utils/archive.py (no function) 15 0 1 2 0 100%
src/ensembl/utils/argparse.py ArgumentParser.__init__ 3 0 0 0 0 100%
src/ensembl/utils/argparse.py ArgumentParser._validate_src_path 6 0 0 4 0 100%
src/ensembl/utils/argparse.py ArgumentParser._validate_dst_path 13 0 0 12 1 96%
src/ensembl/utils/argparse.py ArgumentParser._validate_number 9 0 0 4 0 100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument 3 0 0 2 0 100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument_src_path 3 0 0 0 0 100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument_dst_path 3 0 0 2 0 100%
src/ensembl/utils/argparse.py ArgumentParser.add_argument_url 3 0 0 0 0 100%
src/ensembl/utils/argparse.py ArgumentParser.add_numeric_argument 4 0 0 4 0 100%
src/ensembl/utils/argparse.py ArgumentParser.add_server_arguments 8 0 0 2 0 100%
src/ensembl/utils/argparse.py ArgumentParser.add_log_arguments 10 0 0 4 0 100%
src/ensembl/utils/argparse.py ArgumentParser.parse_args 7 0 0 4 0 100%
src/ensembl/utils/argparse.py (no function) 22 0 0 0 0 100%
src/ensembl/utils/database/__init__.py (no function) 3 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.__init__ 4 0 0 2 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.__repr__ 0 0 2 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.load_metadata 2 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.create_all_tables 2 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.create_table 2 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.url 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.db_name 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.host 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.port 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.dialect 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.tables 3 0 0 2 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.get_primary_key_columns 1 0 0 2 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.get_columns 1 0 0 2 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.connect 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.begin 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.dispose 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection._enable_sqlite_savepoints 4 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection._enable_sqlite_savepoints.do_connect 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection._enable_sqlite_savepoints.do_begin 1 0 0 0 0 100%
src/ensembl/utils/database/dbconnection.py DBConnection.session_scope 12 0 0 2 1 93%
src/ensembl/utils/database/dbconnection.py DBConnection.test_session_scope 20 7 0 4 1 58%
src/ensembl/utils/database/dbconnection.py (no function) 37 0 1 0 0 100%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__init__ 21 2 0 8 2 86%
src/ensembl/utils/database/unittestdb.py UnitTestDB._load_schema_and_data 18 3 0 20 2 87%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__repr__ 0 0 2 0 0 100%
src/ensembl/utils/database/unittestdb.py UnitTestDB.drop 2 0 0 0 0 100%
src/ensembl/utils/database/unittestdb.py UnitTestDB._load_data 7 5 0 6 1 23%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__enter__ 1 0 0 0 0 100%
src/ensembl/utils/database/unittestdb.py UnitTestDB.__exit__ 1 0 0 0 0 100%
src/ensembl/utils/database/unittestdb.py (no function) 21 0 1 0 0 100%
src/ensembl/utils/logging.py init_logging 8 0 0 2 0 100%
src/ensembl/utils/logging.py init_logging_with_args 3 0 0 2 0 100%
src/ensembl/utils/logging.py (no function) 9 0 0 0 0 100%
src/ensembl/utils/plugin.py pytest_addoption 3 0 0 0 0 100%
src/ensembl/utils/plugin.py pytest_report_header 3 0 0 0 0 100%
src/ensembl/utils/plugin.py local_data_dir 1 0 0 0 0 100%
src/ensembl/utils/plugin.py fixture_assert_files 2 0 0 0 0 100%
src/ensembl/utils/plugin.py fixture_assert_files._assert_files 7 0 0 4 0 100%
src/ensembl/utils/plugin.py fixture_db_factory 7 0 0 4 1 91%
src/ensembl/utils/plugin.py fixture_db_factory._db_factory 9 2 0 4 1 77%
src/ensembl/utils/plugin.py test_dbs 7 0 0 2 0 100%
src/ensembl/utils/plugin.py (no function) 20 0 0 0 0 100%
src/ensembl/utils/rloader.py RemoteFileLoader.__init__ 2 0 0 2 0 100%
src/ensembl/utils/rloader.py RemoteFileLoader.__parse 15 0 0 8 0 100%
src/ensembl/utils/rloader.py RemoteFileLoader.r_open 11 0 0 4 0 100%
src/ensembl/utils/rloader.py (no function) 18 0 0 0 0 100%
Total   427 19 15 134 10 94%

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