All the methods from all the packages, with links to the packages they are defined in:

- c -

• cache_file() : Bio::EnsEMBL::LookUp::LocalLookUp
• clear_cache() : Bio::EnsEMBL::LookUp::LocalLookUp
• compara() : Bio::EnsEMBL::MetaData::GenomeInfo
• compara_to_dba() : Bio::EnsEMBL::LookUp::RemoteLookUp
• count_alignments() : Bio::EnsEMBL::MetaData::GenomeInfo
• count_by_biotype() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_by_interpro() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_by_xref() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_features() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_genotypes() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_hash_lengths() : Bio::EnsEMBL::MetaData::BaseInfo , Bio::EnsEMBL::MetaData::GenomeInfo
• count_hash_values() : Bio::EnsEMBL::MetaData::BaseInfo , Bio::EnsEMBL::MetaData::GenomeInfo
• count_interpro() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_interpro_domains() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_phenotypes() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_structural_variations() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_toplevel() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_variation() : Bio::EnsEMBL::MetaData::GenomeInfo
• count_variations() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer
• count_xrefs() : Bio::EnsEMBL::MetaData::AnnotationAnalyzer