All modules for which code is available

• ensembl.tools.anno.protein_annotation.genblast
• ensembl.tools.anno.protein_annotation.miniprot
• ensembl.tools.anno.repeat_annotation.dust
• ensembl.tools.anno.repeat_annotation.red
• ensembl.tools.anno.repeat_annotation.repeatmasker
• ensembl.tools.anno.repeat_annotation.trf
• ensembl.tools.anno.simple_feature_annotation.cpg
• ensembl.tools.anno.simple_feature_annotation.eponine
• ensembl.tools.anno.snc_rna_annotation.cmsearch
• ensembl.tools.anno.snc_rna_annotation.trnascan
• ensembl.tools.anno.transcriptomic_annotation.augustus
• ensembl.tools.anno.transcriptomic_annotation.minimap
• ensembl.tools.anno.transcriptomic_annotation.scallop
• ensembl.tools.anno.transcriptomic_annotation.star
• ensembl.tools.anno.transcriptomic_annotation.stringtie