Red

Red is the first repeat-detection tool capable of labeling its training data

API

Red is the first repeat-detection tool capable of labeling its training data and training itself automatically on an entire genome.

References

[1]

ensembl.tools.anno.repeat_annotation.red.run_red(genome_file, output_dir, red_bin=PosixPath('Red'))

Run Red on genome file

param genome_file:

Genome file path.

type genome_file:

Path

param output_dir:

Working directory path.

type output_dir:

Path

param red_bin:

Red software path.

type red_bin:

Path, default Red

return:

Masked genome file

rtype:

str

Parameters:

• genome_file (Path)

• output_dir (Path)

• red_bin (Path)

Return type:

str