Stringtie#
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.
API#
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus. .. rubric:: References
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- ensembl.tools.anno.transcriptomic_annotation.stringtie.run_stringtie(output_dir, stringtie_bin=PosixPath('stringtie'), num_threads=1)[source]#
- StringTie assembler of short read data.
- param output_dir:
Working directory path.
- type output_dir:
Path
- param stringtie_bin:
Software path.
- type stringtie_bin:
Path, default stringtie
- param num_threads:
Number of available threads.
- type num_threads:
int, default 1
- return:
None
- rtype:
None